Multiscale modelling
Last updated on
Wed, 12 Jan 2022
Arnau Montagud
Researcher on Computational Systems Biology
My research interests include Boolean and multiscale modelling, data analyses and data integration.
Related
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
- Lessons learned from a performance analysis and optimization of a multiscale cellular simulation
- Multiscale model of the different modes of cancer cell invasion
- Parallel Model Exploration for Tumor Treatment Simulations
- Optimizing dosage-specific treatments in a multi-scale model of a tumor growth
Publications
In this paper, we present the re-implementation of a stochastic simulation of Boolean models using MaBoSS in an agent-based model simulator using PhysiCell. We propose this work as a suitable framework to capture macroscopic phenotypical changes from environment and genetic perturbations.
Miguel Ponce-de-Leon,
Arnau Montagud,
Vincent Noel,
Gerard Pradas,
Annika Meert,
Emmanuel Barillot,
Laurence Calzone,
Alfonso Valencia
Marc Clascà,
Marta Garcia-Gasulla,
Arnau Montagud,
José Carbonell-Caballero,
Alfonso Valencia
Marco Ruscone,
Arnau Montagud,
Philippe Chavrier,
Olivier Destaing,
Isabelle Bonnet,
Andrei Zinovyev,
Emmanuel Barillot,
Vincent Noel,
Laurence Calzone
Charilaos Akasiadis,
Miguel Ponce-de-Leon,
Arnau Montagud,
Evangelos Michelioudakis,
Alexia Atsidakou,
Elias Alevizos,
Alexander Artikis,
Alfonso Valencia,
Georgios Paliouras
Miguel Ponce-de-Leon,
Arnau Montagud,
Charilaos Akasiadis,
Janina Schreiber,
Thaleia Ntiniakou,
Alfonso Valencia
An overview of where is the multiscale modelling field and what it needs to have complex, giga-scale simulations
Arnau Montagud,
Miguel Ponce-de-Leon,
Alfonso Valencia
Gaurav Saxena,
Miguel Ponce-de-Leon,
Arnau Montagud,
David Vicente Dorca,
Alfonso Valencia
In this paper, we present the implementation of a stochastic simulation of Boolean models using MaBoSS in an agent-based model simulator using PhysiCell. We propose this work as a suitable framework to capture macroscopic phenotypical changes from environment and genetic perturbations.
Gaelle Letort,
Arnau Montagud,
Gautier Stoll,
Randy Heiland,
Emmanuel Barillot,
Paul Macklin,
Andrei Zinovyev,
Laurence Calzone